All functions defined here can be overloaded in specific scenarii (see module doc) More...

Inheritance diagram for Evolife.Scenarii.Default_Scenario.Default_Scenario:

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Collaboration diagram for Evolife.Scenarii.Default_Scenario.Default_Scenario:

Public Member Functions
def	__init__ (self, Name='Default scenario', CfgFile='')
	Loads parameters, sets gene map and calls local initialization. More...

def	initialization (self)
	local initialization, to be overloaded More...

def	genemap (self)
	Defines the name of genes and their position on the DNA. More...

def	phenemap (self)
	Defines the set of non inheritable characteristics. More...

def	behaviour (self, best_individual, avg_individual)
	returns information about the phenotype of a given individual (best individual or fictitious individual with average genome) for display purposes (e.g. More...

def	prepare (self, indiv)
	The following functions are used # internally, called from 'life_game' #. More...

def	start_game (self, members)
	defines what is to be done at the group level each year before interactions occur - Used in 'life_game' More...

def	evaluation (self, indiv)
	Implements the computation of individuals' scores - - Used in 'life_game'. More...

def	partner (self, indiv, members)
	Decides whom to interact with - Used in 'life_game'. More...

def	interaction (self, indiv, partner)
	Nothing by default - Used in 'life_game'. More...

def	end_game (self, members)
	defines what to do at the group level once all interactions have occurred - Used in 'life_game' More...

def	life_game (self, members)
	Life games (or their components) are defined in specific scenarii life_games calls: More...

def	lives (self, members)
	converts scores into life points More...

def	season (self, year, members)
	This function is called at the beginning of each year. More...

def	parenthood (self, RankedCandidates, Def_Nb_Children)
	Determines the number of children that would-be parents may have depending on their rank. More...

def	parents (self, candidates)
	Selects one couple from candidates. More...

def	couples (self, members, nb_children=-1)
	Returns a set of couples that will beget newborns. More...

def	new_agent (self, child, parents)
	initializes newborns - parents==None when the population is created More...

def	remove_agent (self, agent)
	action to be performed when an agent dies More...

def	update_positions (self, members, groupLocation)
	Allows to define spatial coordinates for individuals. More...

def	default_view (self)
	Defines which windows should be open when the program starts Example: ['Genomes', 'Field', ('Trajectories', 320), ('Network', 500, 200)] optional numbers provide width and height. More...

def	legends (self)
	The returned string will be displayed at the bottom ot the Legend window. More...

def	display_ (self)
	Defines what is to be displayed. More...

def	wallpaper (self, Window)
	Displays background image or colour when the window is created. More...

def	Field_grid (self)
	returns a list of graphic orders for initial display on the Field window More...

def	Trajectory_grid (self)
	returns a list of graphic orders for initial display on the Trajectory window More...

Public Member Functions inherited from Evolife.Genetics.Genetic_map.Genetic_map
def	__init__ (self, GeneMap)
	just calls init_genes More...

def	init_genes (self, gene_list)
	creates genes and puts them into 'GeneMap' Accepted syntax: ['genename1', 'genename2',...]: lengths and coding are retrieved from configuration. More...

def	get_gene (self, locus)
	returns GeneMap[locus] More...

def	get_locus (self, gene_name)
	returns the gene's locus More...

def	get_gene_name (self, locus)
	finds the name of the gene at locus More...

def	get_gene_names (self)
	returns genes' names as a list More...

def	get_gene_boundaries (self, locus)
	finds the gene's boundaries on the DNA More...

def	get_coding (self, locus)
	returns the gene's coding type (weighted, unweighted, ...) More...

def	gene_boundaries (self, gene_name)
	finds the gene's boundaries on the DNA More...

def	geneMap_length (self)
	location of the end of the last gene on Genemap More...

def	locus_range (self, Locus)
	returns the maximal amplitude of the gene at Locus More...

def	gene_range (self, gene_name)
	returns the maximal amplitude of the gene More...

def	gene_pattern (self)
	returns a binary mask showing gene alternation on DNA More...

Public Attributes
	Name

	ALocalQuantity

Public Attributes inherited from Evolife.Genetics.Genetic_map.Genetic_map
	GeneMap

Detailed Description

All functions defined here can be overloaded in specific scenarii (see module doc)

Definition at line 63 of file Default_Scenario.py.

Constructor & Destructor Documentation

◆ init()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.__init__	(	self,
		Name = `'Default scenario'`,
		CfgFile = `''`
	)

Loads parameters, sets gene map and calls local initialization.

Reimplemented from Evolife.Genetics.Genetic_map.Genetic_map.

Reimplemented in Evolife.Scenarii.CustomScenario.Scenario.

Definition at line 67 of file Default_Scenario.py.

Member Function Documentation

◆ behaviour()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.behaviour	(	self,
		best_individual,
		avg_individual
	)

returns information about the phenotype of a given individual (best individual or fictitious individual with average genome) for display purposes (e.g.

a trajectory in a maze)

Definition at line 108 of file Default_Scenario.py.

◆ couples()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.couples	(	self,
		members,
		nb_children = `-1`
	)

Returns a set of couples that will beget newborns.

Note that a given individual may appear several times. By default, the probability for an individual to be in a couple (and thus to have a child) decreases with its rank in 'members'

Definition at line 235 of file Default_Scenario.py.

◆ default_view()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.default_view ( self )

Defines which windows should be open when the program starts Example: ['Genomes', 'Field', ('Trajectories', 320), ('Network', 500, 200)] optional numbers provide width and height.

Definition at line 281 of file Default_Scenario.py.

◆ display_()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.display_ ( self )

Defines what is to be displayed.

It offers the possibility of plotting the evolution through time of the best score, the average score, any locally defined value, and the average value of the various genes and phenes. It should return a list of pairs (C, X) or triples (C, X, L) where C is the curve colour (colour name or number) and X can be 'best', 'average', 'ALocalQuantity' (where ALocalQuantity is a local variable) or any gene name defined in genemap or any phene defined in phenemap. L (optional) is a legend string

Reimplemented in Evolife.Scenarii.CustomScenario.Scenario.

Definition at line 297 of file Default_Scenario.py.

◆ end_game()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.end_game	(	self,
		members
	)

defines what to do at the group level once all interactions have occurred - Used in 'life_game'

Definition at line 154 of file Default_Scenario.py.

◆ evaluation()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.evaluation	(	self,
		indiv
	)

Implements the computation of individuals' scores - - Used in 'life_game'.

Definition at line 131 of file Default_Scenario.py.

◆ Field_grid()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.Field_grid ( self )

returns a list of graphic orders for initial display on the Field window

Definition at line 329 of file Default_Scenario.py.

◆ genemap()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.genemap ( self )

Defines the name of genes and their position on the DNA.

Accepted syntax:

['genename1', 'genename2',...]: lengths and coding are retrieved from configuration.
[('genename1', 8), ('genename2', 4),...]: numbers give lengths in bits; coding is retrieved from configuration.
[('genename1', 8, 'Weighted'), ('genename2', 4, 'Unweighted'),...]: coding can be 'Weighted', 'Unweighted', 'Gray', 'NoCoding'. Note that 'Unweighted' is unsuitable to explore large space.

Reimplemented in Evolife.Scenarii.CustomScenario.Scenario.

Definition at line 92 of file Default_Scenario.py.

◆ initialization()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.initialization ( self )

local initialization, to be overloaded

Definition at line 87 of file Default_Scenario.py.

◆ interaction()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.interaction	(	self,
		indiv,
		partner
	)

Nothing by default - Used in 'life_game'.

Definition at line 149 of file Default_Scenario.py.

◆ legends()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.legends ( self )

The returned string will be displayed at the bottom ot the Legend window.

Useful to describe what is to be seen in the various windows.

Definition at line 288 of file Default_Scenario.py.

◆ life_game()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.life_game	(	self,
		members
	)

Life games (or their components) are defined in specific scenarii life_games calls:

start_game (which calls 'prepare')
interaction (which calls 'partner')
end_game
evaluation
lives

Definition at line 161 of file Default_Scenario.py.

◆ lives()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.lives	(	self,
		members
	)

converts scores into life points

Definition at line 189 of file Default_Scenario.py.

◆ new_agent()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.new_agent	(	self,
		child,
		parents
	)

initializes newborns - parents==None when the population is created

Definition at line 261 of file Default_Scenario.py.

◆ parenthood()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.parenthood	(	self,
		RankedCandidates,
		Def_Nb_Children
	)

Determines the number of children that would-be parents may have depending on their rank.

Definition at line 211 of file Default_Scenario.py.

◆ parents()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.parents	(	self,
		candidates
	)

Selects one couple from candidates.

Candidates are (indiv, NbChildren) pairs, where NbChildren indicates the number of children that indiv can still have

Definition at line 226 of file Default_Scenario.py.

◆ partner()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.partner	(	self,
		indiv,
		members
	)

Decides whom to interact with - Used in 'life_game'.

Definition at line 138 of file Default_Scenario.py.

◆ phenemap()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.phenemap ( self )

Defines the set of non inheritable characteristics.

Definition at line 102 of file Default_Scenario.py.

◆ prepare()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.prepare	(	self,
		indiv
	)

The following functions are used # internally, called from 'life_game' #.

defines what is to be done at the individual level before interactions occur - Used in 'start_game'

Definition at line 119 of file Default_Scenario.py.

◆ remove_agent()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.remove_agent	(	self,
		agent
	)

action to be performed when an agent dies

Definition at line 267 of file Default_Scenario.py.

◆ season()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.season	(	self,
		year,
		members
	)

This function is called at the beginning of each year.

Definition at line 206 of file Default_Scenario.py.

◆ start_game()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.start_game	(	self,
		members
	)

defines what is to be done at the group level each year before interactions occur - Used in 'life_game'

Definition at line 125 of file Default_Scenario.py.

◆ Trajectory_grid()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.Trajectory_grid ( self )

returns a list of graphic orders for initial display on the Trajectory window

Definition at line 334 of file Default_Scenario.py.

◆ update_positions()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.update_positions	(	self,
		members,
		groupLocation
	)

Allows to define spatial coordinates for individuals.

These positions are displayed in the Field window. Coordinates are typically (x,y,c) where c (optional) is the colour representing the agent

Definition at line 272 of file Default_Scenario.py.

◆ wallpaper()

def Evolife.Scenarii.Default_Scenario.Default_Scenario.wallpaper	(	self,
		Window
	)

Displays background image or colour when the window is created.

Definition at line 322 of file Default_Scenario.py.

Member Data Documentation

◆ ALocalQuantity

Evolife.Scenarii.Default_Scenario.Default_Scenario.ALocalQuantity

Definition at line 90 of file Default_Scenario.py.

◆ Name

Evolife.Scenarii.Default_Scenario.Default_Scenario.Name

Definition at line 70 of file Default_Scenario.py.

The documentation for this class was generated from the following file:

Scenarii/Default_Scenario.py

Public Member Functions

Public Attributes

Detailed Description

Constructor & Destructor Documentation

◆ __init__()

Member Function Documentation

◆ behaviour()

◆ couples()

◆ default_view()

◆ display_()

◆ end_game()

◆ evaluation()

◆ Field_grid()

◆ genemap()

◆ initialization()

◆ interaction()

◆ legends()

◆ life_game()

◆ lives()

◆ new_agent()

◆ parenthood()

◆ parents()

◆ partner()

◆ phenemap()

◆ prepare()

◆ remove_agent()

◆ season()

◆ start_game()

◆ Trajectory_grid()

◆ update_positions()

◆ wallpaper()

Member Data Documentation

◆ ALocalQuantity

◆ Name

◆ init()